Package: Rtrack 2.0.4


Rupert Overall
Rtrack: Spatial Navigation Strategy Analysis
A toolkit for the analysis of paths from spatial tracking experiments and calculation of goal-finding strategies. This package is centered on an approach using machine learning for path classification.
Authors:
Rtrack_2.0.4.tar.gz
Rtrack_2.0.4.zip(r-4.7-any)Rtrack_2.0.4.zip(r-4.6-any)Rtrack_2.0.4.zip(r-4.5-any)
Rtrack_2.0.4.tgz(r-4.6-any)Rtrack_2.0.4.tgz(r-4.5-any)
Rtrack_2.0.4.tar.gz(r-4.7-any)Rtrack_2.0.4.tar.gz(r-4.6-any)
Rtrack_2.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Rtrack/json (API)
| # Install 'Rtrack' in R: |
| install.packages('Rtrack', repos = c('https://rupertoverall.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rupertoverall/rtrack/issues
Pkgdown/docs site:https://rupertoverall.net
Last updated from:d1dfe497b7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 243 | ||
| source / vignettes | OK | 213 | ||
| linux-release | OK | 250 | ||
| macos-release | OK | 299 | ||
| macos-oldrel | OK | 267 | ||
| windows-devel | OK | 195 | ||
| windows-release | OK | 197 | ||
| windows-oldrel | OK | 130 | ||
| wasm-release | OK | 140 |
Exports:calculate_metricscall_strategycheck_experimentexport_dataexport_resultsidentify_track_formatplot_densityplot_pathplot_strategiesplot_variableread_arenaread_experimentread_paththreshold_strategies
Dependencies:backportsbase64encbslibcachemcellrangercheckmatecliclustercolorspacecpp11crayondata.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteKernSmoothknitrlabelinglifecyclemagrittrmemoisemimennetopenxlsxpbapplypillarpkgconfigprettyunitsprogressR6randomForestrappdirsRColorBrewerRcppreadxlrematchrjsonrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrterratibbletinytexutf8vctrsviridisLitewithrxfunyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculation of spatial search path metrics. | calculate_metrics |
| Calculation of search strategies. | call_strategy |
| Check experiment data. | check_experiment |
| Export experiment data to a trackxf file. | export_data |
| Export experiment results to a dataframe or file. | export_results |
| Check the format of a track file. | identify_track_format |
| Plot a path density map. | plot_density |
| Plot a path. | plot_path |
| Plot water maze strategies. | plot_strategies |
| Plot path metrics. | plot_variable |
| Read an arena description. | read_arena |
| Read experiment data. | read_experiment |
| Read path coordinates from raw data formats. | read_path |
| Subset an rtrack_strategies object. | threshold_strategies |
